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3'-O-(2-Nitrobenzyl)-dTTP

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Catalog No. TUN2022 Copy Product Info
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3'-O-(2-Nitrobenzyl)-dTTP serves as a reversible terminator for DNA chain extension. It interacts with the 9°N polymerase (exo-) A485L/Y409V, being recognized and incorporated into the extending DNA chain, temporarily halting polymerase activity. This compound features a 3'-O-(2-nitrobenzyl) blocking group, which can be removed by laser irradiation to regenerate the free 3'-OH group and restore polymerase function. 3'-O-(2-Nitrobenzyl)-dTTP is applicable in DNA sequencing research.

3'-O-
(2-Nitrobenzyl)-dTTP

Cas No. 219607-49-5
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For In stock only · Estimated delivery: USA Stock (1-2 days) Global Stock (5-7 days)
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For research use only—not for human use. No sales to individuals. Use as intended only.
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Product Introduction

Bioactivity
Description
3'-O-(2-Nitrobenzyl)-dTTP serves as a reversible terminator for DNA chain extension. It interacts with the 9°N polymerase (exo-) A485L/Y409V, being recognized and incorporated into the extending DNA chain, temporarily halting polymerase activity. This compound features a 3'-O-(2-nitrobenzyl) blocking group, which can be removed by laser irradiation to regenerate the free 3'-OH group and restore polymerase function. 3'-O-(2-Nitrobenzyl)-dTTP is applicable in DNA sequencing research.
In vitro
3'-O-(2-Nitrobenzyl)-dTTP (100 pmol) acts as a substrate that is efficiently and quantitatively incorporated by the 9°N polymerase (exo-) A485L/Y409V during solution-phase polymerase extension reactions, yielding a single extension product detectable by MALDI-TOF MS at 5602 m/z. Additionally, 3'-O-(2-Nitrobenzyl)-dTTP (200 pmol) functions as an efficient reversible terminator in pyrosequencing, facilitating accurate and unambiguous interpretation of homopolymeric T regions in DNA templates immobilized on Sepharose magnetic beads via discrete mononucleotide PPi signal detection.
Chemical Properties
Molecular Weight617.29
FormulaC17H22N3O16P3
Cas No.219607-49-5
SmilesO=C1N([C@@H]2O[C@H](COP(OP(OP(=O)(O)O)(=O)O)(=O)O)[C@@H](OCC3=C(N(=O)=O)C=CC=C3)C2)C=C(C)C(=O)N1
Storage & Solubility Information
StoragePowder: -20°C for 3 years | In solvent: -80°C for 1 year Shipping with blue ice/Shipping at ambient temperature.

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In Vivo Formulation Calculator (Clear solution)

Please enter your animal experiment information in the following box and click Calculate to obtain the stock solution preparation method and in vivo formula preparation method:
TargetMol | Animal experiments For example, if the intended dosage is 10 mg/kg for animals weighing 20 g , with a dosing volume of 100 μL per animal, TargetMol | Animal experiments and a total of 10 animals are to be administered, using a formulation of TargetMol | reagent 10% DMSO+ 40% PEG300+ 5% Tween 80+ 45% Saline/PBS/ddH2O , the resulting working solution concentration would be 2 mg/mL.
Stock Solution Preparation:

Dissolve 2 mg of the compound in 100 μL DMSOTargetMol | reagent to obtain a stock solution at a concentration of 20 mg/mL . If the required concentration exceeds the compound's known solubility, please contact us for technical support before proceeding.

Preparation of the In Vivo Formulation:

1) Add 100 μL of the DMSOTargetMol | reagent stock solution to 400 µL PEG300TargetMol | reagent and mix thoroughly until the solution becomes clear.

2) Add 50 µL Tween 80 and mix well until fully clarified.

3) Add 450 µL Saline,PBS or ddH2OTargetMol | reagent and mix thoroughly until a homogeneous solution is obtained.

This example is provided solely to demonstrate the use of the In Vivo Formulation Calculator and does not constitute a recommended formulation for any specific compound. Please select an appropriate dissolution and formulation strategy based on your experimental model and route of administration.
All co-solvents required for this protocol, includingDMSO, PEG300/PEG400, Tween 80, SBE-β-CD, and Corn oil, are available for purchase on the TargetMol website.
1 Enter information below:
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2 Enter the in vivo formulation:
% DMSO
%
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% Saline/PBS/ddH2O

Dose Conversion

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Tech Support

Please see Inhibitor Handling Instructions for more frequently ask questions. Topics include: how to prepare stock solutions, how to store products, and cautions on cell-based assays & animal experiments, etc
Related Tags: 3'-O-(2-Nitrobenzyl)-dTTP in vitro | 3'-O-(2-Nitrobenzyl)-dTTP formula | 3'-O-(2-Nitrobenzyl)-dTTP molecular weight